Comment updates

src/initialization/chromosome_structure/chromosome.py

@@ -1,7 +1,7 @@
 class chromosome:
     
-    # fitness = Empty; genes = [gene, gene, gene, etc.]
     def __init__(self, genes = None):
+        """Initialize the chromosome based on input gene list, defaulted to an empty list"""
         if genes is None:
             self.genes = []
         else:
@@ -9,29 +9,37 @@ class chromosome:
         self.fitness = None
 
     def add_gene(self, gene, index = -1):
+        """Add a gene to the chromosome at the specified index, defaulted to end of the chromosome"""
         if index == -1:
             index = len(self.genes)
         self.genes.insert(index, gene)
 
     def remove_gene(self, index):
+        """Remove a gene from the chromosome at the specified index"""
         del self.genes[index]
 
     def get_genes(self):
+        """Return all genes in the chromosome"""
         return self.genes
 
     def get_fitness(self):
+        """Return the fitness of the chromosome"""
         return self.fitness
 
     def set_gene(self, gene, index):
+        """Set a gene at a specific index"""
         self.genes[index] = gene
 
     def set_genes(self, genes):
+        """Set the entire gene set of the chromosome"""
         self.genes = genes
 
     def set_fitness(self, fitness):
+        """Set the fitness value of the chromosome"""
         self.fitness = fitness
 
     def __repr__(self):
+        """Format the repr() output for the chromosome"""
         output_str = ''
         for gene in self.genes:
             output_str += gene.__repr__()

src/initialization/gene_structure/gene.py

@@ -4,21 +4,28 @@ def check_gene(value):
     return value
 
 class gene:
+
     def __init__(self, value):
+        """Initialize a gene with fitness of value None and the input value"""
         self.fitness = None
         self.value = check_gene(value)
 
     def get_fitness(self):
+        """Return fitness of the gene"""
         return self.fitness
 
     def get_value(self):
+        """Return value of the gene"""
         return self.value
 
     def set_fitness(self, fitness):
+        """Set fitness of the gene"""
         self.fitness = fitness
 
     def set_value(self):
+        """Set value of the gene"""
         self.value = value
 
     def __repr__(self):
+        """Format the repr() output value"""
         return f'[{self.value}]'

src/initialization/population_structure/population.py

@@ -1,7 +1,7 @@
 class population:
 
-    # fitness = Empty; population = [chromosome, chromosome, etc.]
     def __init__(self, chromosomes = None):
+        """Intiialize the population with fitness of value None, and a set of chromosomes dependant on user-passed parameter"""
         if chromosomes is None:
           self.chromosomes = []
         else:
@@ -9,47 +9,48 @@ class population:
         self.fitness = None
 
     def get_closet_fitness(self,value):
-        # Get the chomosome that has the closets fitness to the value defined
+        """Get the chomosome that has the closets fitness to the value defined"""
         pass
 
     def add_chromosome(self, chromosome, index = -1):
+        """Adds a chromosome to the population at the input index, defaulted to the end of the chromosome set"""
         if index == -1:
             index = len(self.chromosomes)
         self.chromosomes.insert(index, chromosome)
 
     def remove_chromosome(self, index):
+        """removes a chromosome from the indicated index"""
         del self.chromosomes[index]
 
     def get_all_chromosomes(self):
+        """returns all chromosomes in the population"""
         return chromosomes
 
     def get_fitness(self):
+        """returns the population's fitness"""
         return self.fitness
 
     def set_all_chromosomes(self, chromosomes):
+        """sets the chromosome set of the population"""
         self.chromosomes = chromosomes
 
-    def set_chromosome(self, chromosomes, index):
+    def set_chromosome(self, chromosome, index):
-        self.chromosome[index] = chromosome
+        """sets a specific chromosome at a specific index"""
+        self.chromosomes[index] = chromosome
 
     def set_fitness(self, fitness):
+        """Sets the fitness value of the population""" 
         self.fitness = fitness
 
     def __repr__(self):
+        """Sets the repr() output format"""
         return ''.join([chromosome.__repr__() for chromosome in self.chromosomes])
 
     def print_all(self):
-        # Ex .Current population
+        """Prints information about the population in the following format:"""
-        #     Chromosome 1 - [gene][gene][gene][.etc] /  Chromosome fitness - #
+        """Ex .Current population"""
+        """Chromosome 1 - [gene][gene][gene][.etc] /  Chromosome fitness - """
         print("Current population:")
         for index in range(len(self.chromosomes)):
             print(f'Chromosome - {index} {self.chromosomes[index]}', end = "")
             print(f' / Fitness = {self.chromosomes[index].fitness}')
-
-    def generate_first_chromosomes(self, chromosome_count, chromosome_length, gene_lower_bound, gene_upper_bound):
-        #Creating the chromosomes with Genes of random size
-        for x in range(chromosome_count):
-            chromosome = Chromosome(chromosome_length)
-            for y in range(chromosome_length):
-                chromosome.gene_set[y] = Gene(random.randint(gene_lower_bound[y], gene_upper_bound[y]))
-            self.chromosome_set.append(chromosome)